Original Article
Volume: 8 | Issue: 1 | Published: Jun 24, 2025 | Pages: 020 - 026 | DOI: 10.24911/JBCGenetics.11-2222
CFTR interactome may impact gastric cancer: an in silico system-level coexpression analysis
Authors:
Camila Sinimbú Forte
, Amanda Ferreira Vidal
, Pablo Diego do Carmo Pinto
, Gilderlanio Santana de Araújo
Article Info
Authors
Camila Sinimbú Forte
Institute of Technology, Federal University of Pará, Belém, Brazil
Amanda Ferreira Vidal
Vale Institute of Technology, Belém, Brazil
Pablo Diego do Carmo Pinto
Institute of Medical Sciences, Federal University of Pará, Belém, Brazil
Gilderlanio Santana de Araújo
Institute of Biological Sciences, Federal University of Pará, Belém, Brazil
Publication History
Received: May 18, 2025
Accepted: June 16, 2025
Published: June 24, 2025
Abstract
Background: The cystic fibrosis transmembrane conductance regulator (CFTR) dysfunction is linked to gastrointestinal inflammation and has been implicated in early-onset malignancies. However, its role in gastric cancer remains poorly understood.
Aims: To investigate the CFTR interactome and assess its potential functional involvement across different subtypes of gastric cancer.
Methods: We conducted a system-level in silico analysis using data from the Cancer Genome Atlas Stomach Adenocarcinoma (TCGA-STAD). CFTR expression and co-expression profiles were examined across molecular and histological subtypes of gastric cancer, including signet-ring cell carcinoma (Lauren’s classification). Differential gene expression (DGE) and co-expression analyses were integrated with protein-protein interaction networks, pathway enrichment, and gene ontology (GO) analysis to delineate CFTR’s functional associations.
Results: CFTR did not exhibit significant differential expression across gastric cancer subtypes. However, co-expression analysis identified CFTR as a key hub gene with a distinct interaction network, especially prominent in the signet-ring cell carcinoma subtype. Enrichment analyses revealed that CFTR's interactome is involved in regulatory pathways related to cellular homeostasis, ion transport, and immune modulation, suggesting a noncanonical yet critical role in tumor biology.
Conclusion: While CFTR expression remains stable across gastric cancer subtypes, its interactome reveals significant regulatory roles, particularly in signet-ring cell carcinoma. These findings highlight the potential contribution of CFTR to gastric cancer pathogenesis through its involvement in broader molecular networks rather than through expression changes alone.
Keywords: Gene co-expression network, CFTR, gastric cancer subtypes, signet-ring cell carcinoma